CoBiODA informations
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Institute: Institut de Pharmacologie Moléculaire et Cellulaire

Address: IPMC UMR7275, 660 Route des Lucioles, SOPHIA ANTIPOLIS, 06560 VALBONNE

Website: https://cobioda.github.io/

Manager: Kevin Lebrigand

Contact: lebrigand@ipmc.cnrs.fr


Description of activity
The main aim of CoBiODA is to setup a bioinformatics platform from the angle of a research support centre for the IPMC teams aiming to allow an emulation of the bioinformatics resources within a common structure. Such a structure will represent a possibility for developing strong interactions between bioinformaticians, gathering the team bioinformatics efforts and will facilitated transversal integration of heterogeneous data sets produced by the different technical platforms. Research teams could thus benefit from the high-performance bioinformatics support necessary for the production of high-impact publications enhancing the work of the institute's researchers and engineers.

Technical infrastructures
Bego

Bego


Directly hosted at IPMC, Bego offers the possibility to run statistical analyses by running Python notebooks via VSCode software and SSH remote connexion, as well as by connecting to the Rstudio server

Configuration : HPE DL380 2 x Xeon-G 6248 2x20 cores, 2Tb RAM, 40Tb disk, 1 GPU Nvidia A100, Debian

Guidelines : To connect to Bego, you will need to be granted a Linux account by Kevin Lebrigand (lebrigand@ipmc.cnrs.fr) which is Bego's administrator. To use Bego, you need to be comfortable with the Linux command line and the rules of good practice on a shared computing cluster.


Carra

Carra


Directly hosted at IPMC, Carra offers the possibility to run statistical analyses by running Python jupyter notebooks via SSH remote connexion, as well as by connecting to the Rstudio server

Configuration : DELL PowerEdge R440, Xeon 4 cores, 128Gb RAM, 10 Tb disk, Debian

Guidelines : To connect to Carra, you will need to be granted a Linux account by Kevin Lebrigand (lebrigand@ipmc.cnrs.fr) which is Carra's administrator. To use Carra, you need to be comfortable with the Linux command line and the rules of good practice on a shared computing cluster.


Joyo

Joyo


Since 2014, Joyo is used by the IPMC's functionnal genomics platform to perform primary analyses of the sequencing projects. However, Joyo will soon be replaced for tasks requiring computing power.

Configuration : Joyo is a computer cluster of 12 CPU nodes (20 cores, 64Gb RAM).

Guidelines :