Index

Reference publications

Aging affects reprogramming of murine pulmonary capillary endothelial cells after lung injury

Preprint, September 2024

Marin Truchi 1*, Grégoire Savary 2*, Marine Gautier-Isola 1, Hugo Cadis 1, Alberto Baeri 1, Arun Lingampally 3, Célia Scribe 1, Virginie Magnone 1, Cédric Girard-Riboulleau 1, Marie-Jeanne Arguel 1, Clémentine de Schutter 2, Julien Fassy 1, Nihad Boukrout 2, Romain Larrue 2, Nathalie Martin 2, Roger Rezzonico 1, Olivier Pluquet 2, Michael Perrais 2, Véronique Hofman 4, Charles-Hugo Marquette 5, Paul Hofman 4, Andreas Günther 6,7, Nicolas Ricard 8, Pascal Barbry 1, Sylvie Leroy 1,5, Kevin Lebrigand 1, Saverio Bellusci 3, Christelle Cauffiez 2, Georges Vassaux 1, Nicolas Pottier 2* and Bernard Mari 1*#

The spatial landscape of gene expression isoforms in tissue sections

Nucleic Acids Res., March 2023

Kevin Lebrigand 1, Joseph Bergenstråhle 2, Kim Thrane 2, Annelie Mollbrink 2, Konstantinos Meletis 3, Pascal Barbry 1, Rainer Waldmann 1, Joakim Lundeberg 2

Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network

Front. Bioinform., March 2024

Marin Truchi 1, Caroline Lacoux 1, Cyprien Gille 2, Julien Fassy 1, Virginie Magnone 1, Rafael Lopes Goncalves 1, Cédric Girard-Riboulleau 1, Iris Manosalva-Pena 3, Marine Gautier-Isola 1, Kevin Lebrigand 1, Pascal Barbry 1, Salvatore Spicuglia 3, Georges Vassaux 1, Roger Rezzonico 1, Michel Barlaud 2, Bernard Mari 1