Documented pipelines


The main goal of ODIN portal is to store documented pipelines that are used to analyse omics data. The documentation covers the type and resolution of quantitative omics data to which the pipeline is dedicated, which production systems are able to generate them, and which platform manages this system, before describing the actual bioinformatics analysis steps. Each step in the data processing required to extract biological information is contained in a dedicated module, characterized by its inputs and outputs, as well as the computing environment (IDE, softwares, packages) in which it can be run on the network's IT infrastructures.. The code associated with each module is presented in the form of a notebook, where it is supplemented by guidelines and graphical representations to help users understand the procedure. Finally, publications in which the pipeline has been used are referenced as examples of what can be achieved.



droplet-based single-cell RNAseq

droplet-based single-cell RNAseq

Analysis of single-cell gene expression data generated by droplet-based systems

Transcriptomics Single-cell
sequencing-based spatial transcriptomics

sequencing-based spatial transcriptomics

Analysis of spatial gene expression data generated by sequencing-based systems

Transcriptomics Spatial
imaging-based in-situ spatial single-cell

imaging-based in-situ spatial single-cell

Analysis of single-cell gene expression data generated by imaging-based in-situ systems

Transcriptomics Spatial
mass-spectrometry-based proteomics

mass-spectrometry-based proteomics

Analysis of mass-spectrometry-based proteomics data

Proteomics Bulk
mass-spectrometry-based lipidomics

mass-spectrometry-based lipidomics

Analysis of mass-spectrometry-based lipidomics data

Lipidomics Bulk